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U2OS-CRISPR-SNAPf-SEH1
Tissue
Bone
Disease
Osteosarcoma
Metastatic site
Primary tumor site (bone)

Documents

U2OS-CRISPR-SNAPf-SEH1

Cell line · Product number 300664

U2OS-CRISPR-SNAPf-SEH1 is a genome-edited human osteosarcoma cell line derived from U2OS cells in which the endogenous SEH1L (SEH1) gene has been modified...

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01General information

Description

U2OS-CRISPR-SNAPf-SEH1 is a genome-edited human osteosarcoma cell line derived from U2OS cells in which the endogenous SEH1L (SEH1) gene has been modified using CRISPR/Cas9 technology to encode an in-frame SNAPf tag. SEH1 is a component of the Y-complex (also known as the NUP107-160 complex), a core structural module of the nuclear pore complex (NPC) that contributes to pore scaffold assembly and stability. By inserting the SNAPf coding sequence at the endogenous locus, the tagged SEH1 protein is expressed under native regulatory control, preserving physiological expression levels and minimizing perturbations to nuclear pore composition.

The SNAPf tag is an engineered, fast-reacting variant of the SNAP-tag that covalently binds benzylguanine-conjugated substrates, allowing selective and stable fluorescent labeling in live or fixed cells. In U2OS-CRISPR-SNAPf-SEH1 cells, the fusion protein localizes to the nuclear envelope in a punctate pattern characteristic of NPC distribution. Because labeling occurs at endogenous protein levels, this system is well suited for quantitative fluorescence microscopy, super-resolution imaging, and single-particle tracking analyses aimed at dissecting NPC organization and stoichiometry. The flat morphology and large nuclei of U2OS cells further facilitate high-resolution visualization of nuclear envelope structures.

SEH1 participates in NPC biogenesis and has also been implicated in kinetochore-associated processes during mitosis. Accordingly, this cell line provides a robust platform for investigating cell cycle-dependent NPC assembly and disassembly, spatial organization of the Y-complex within the pore scaffold, and potential dual roles of SEH1 at the nuclear envelope and mitotic kinetochores. U2OS-CRISPR-SNAPf-SEH1 enables mechanistic studies of nuclear pore architecture and dynamics under physiologically relevant expression conditions.

Tissue
Bone
Disease
Osteosarcoma
Metastatic site
Primary tumor site (bone)
Applications
Y-complex/NUP107-160 complex biology; SEH1 in NPC scaffold assembly; kinetochore-associated NPC components; NPC stoichiometry; SNAP pulse-chase labeling; super-resolution microscopy; NPC biogenesis; mitotic NPC disassembly and reassembly

02Classification

Organism
Human
Sex
Female
Growth properties
Adherent
GMO status
GMO-S1
GMO status details
GMO-S1: This human osteosarcoma cell line (U2OS-CRISPR-SNAPf-SEH1) contains a CRISPR-mediated SNAPf-SEH1 fusion that allows selective labeling of the SEH1 nucleoporin. The modification is stably present. This classification applies only within Germany and may differ elsewhere.
Biosafety level
1

03Characteristics

Morphology
Epithelial-like
Cell type
Epithelial cells (osteosarcoma)
Doubling time
approx. 24 to 36 hours

04Identifiers

Citation
U2OS-CRISPR-SNAPf-SEH1 (Cytion catalog number 300664)
NCBI TaxID
9606
Depositor
The Ellenberg Lab (EMBL)

05Expression and susceptibility

Protein expression
SEH1, SNAPf-tag

06Handling and culture

Culture medium
McCoys 5a, w: 3.0 g/L Glucose, w: stable Glutamine, w: 2.0 mM Sodium pyruvate, w: 2.2 g/L NaHCO3 (Cytion article number 820200a)
Incubation atmosphere

37°C, 5% CO2, humidified atmosphere.

Supplements
Supplement the medium with 10% FBS, 3.0 g/L Glucose, stable Glutamine, 2.0 mM Sodium pyruvate, 2.2 g/L NaHCO3, 1% NEAA
Dissociation reagent
Accutase
Subculturing
Remove the old medium from the adherent cells and wash them with PBS that lacks calcium and magnesium. For T25 flasks, use 3-5 ml of PBS, and for T75 flasks, use 5-10 ml. Then, cover the cells completely with Accutase, using 1-2 ml for T25 flasks and 2.5 ml for T75 flasks. Let the cells incubate at room temperature for 8-10 minutes to detach them. After incubation, gently mix the cells with 10 ml of medium to resuspend them, then centrifuge at 300xg for 3 minutes. Discard the supernatant, resuspend the cells in fresh medium, and transfer them into new flasks that already contain fresh medium.
Split ratio
1 to 3
Seeding density
1 to 3 × 10⁴ cells/cm²
Fluid renewal
2 to 3 times per week
Thawing and culturing
  1. Confirm that the vial remains deeply frozen upon delivery, as cells are shipped on dry ice to maintain optimal temperatures during transit.

  2. Upon receipt, either store the cryovial immediately at temperatures below -150°C to ensure the preservation of cellular integrity, or proceed to step 3 if immediate culturing is required.

  3. For immediate culturing, swiftly thaw the vial by immersing it in a 37°C water bath with clean water and an antimicrobial agent, agitating gently for 40-60 seconds until a small ice clump remains.

  4. Perform all subsequent steps under sterile conditions in a flow hood, disinfecting the cryovial with 70% ethanol before opening.

  5. Carefully open the disinfected vial and transfer the cell suspension into a 15 ml centrifuge tube containing 8 ml of room-temperature culture medium, mixing gently.

  6. Centrifuge the mixture at 300 x g for 3 minutes to separate the cells and carefully discard the supernatant containing residual freezing medium.

  7. Gently resuspend the cell pellet in 10 ml of fresh culture medium. For adherent cells, divide the suspension between two T25 culture flasks; for suspension cultures, transfer all the medium into one T25 flask to promote effective cell interaction and growth.

  8. Adhere to established subculture protocols for continued growth and maintenance of the cell line, ensuring reliable experimental outcomes.

07Quality control and cryopreservation

Sterility

Mycoplasma contamination is excluded using both PCR-based assays and luminescence-based mycoplasma detection methods.

To ensure there is no bacterial, fungal, or yeast contamination, cell cultures are subjected to daily visual inspections.

Freeze medium
As a cryopreservation medium, we use complete growth medium (including FBS) + 10% DMSO for adequate post-thaw viability, or CM-1 (Cytion catalog number 800100), which includes optimized osmoprotectants and metabolic stabilizers to enhance recovery and reduce cryo-induced stress.
Storage conditions

For long-term preservation, place vials in vapor-phase liquid nitrogen at about −150 to −196 °C. Storage at −80 °C is acceptable only as a short interim step before transfer to liquid nitrogen.

Shipping conditions

Cryopreserved cell lines are shipped on dry ice in validated, insulated packaging with sufficient refrigerant to maintain approximately −78 °C throughout transit. On receipt, inspect the container immediately and transfer vials without delay to appropriate storage.

08Donor

Donor age
15 years
Ethnicity
Caucasian